PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.7867s1518.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 215aa    MW: 23550.6 Da    PI: 6.7057
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.7867s1518.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.91.9e-2078112135
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                          C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Bostr.7867s1518.1.p  78 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 112
                          ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.8572108IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-1872124IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.9E-1375112No hitNo description
Gene3DG3DSA:3.30.50.102.7E-1776112IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.89E-1477109No hitNo description
PfamPF003204.5E-1878112IPR000679Zinc finger, GATA-type
PROSITE patternPS00344078103IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMGFSMLFSS ENDVVRQSSP YASVDCTLSL GTPSTRLCND DNERRFSSHT SDALGWDFLN  60
GAKKGGGGGG NNLLDRRCAN CDTTSTPLWR NGPRGPKSLC NACGIRFKKE ERRASTAGNS  120
TTGGGSTAAG VPTSDHQAGD YYYYNNNNQY ASSSPWVHHH QHNTQRIPYY SPASSEYSFV  180
DDVRDVDHDV ATDPFLTWRL NVADRTSLVH DFTM*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0295060.0BT029506.1 Arabidopsis thaliana At4g36620 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010446770.11e-128PREDICTED: GATA transcription factor 19-like
SwissprotQ6QPM21e-113GAT19_ARATH; GATA transcription factor 19
TrEMBLD7MBG01e-118D7MBG0_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.7__409__AT4G36620.11e-117(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40572556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.17e-92GATA transcription factor 19